Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015799364.1_cds_XP_016464930.1_5745
CDS Infomation

[gene=LOC107787836] [db_xref=GeneID:107787836] [protein=dihydroxy-acid dehydratase, chloroplastic-like] [frame=2] [exception=annotated by transcript or proteomic data] [protein_id=XP_016464930.1] [location=complement(join(50226..50276,50558..50716,51111..51191,51402..51503,51959..52029,52126..52249,52373..52431,52524..52593,52698..52809,52883..53077,53221..53375,54124..54171,55750..55821,57150..>57534))] [gbkey=CDS]
Sequence

ACCACTCAAAAACTCAACAAATACAGTAGCCGTATAACTGAACCAAAATCCCAAGGTGGG
TCGCAAGCAATTCTATATGGTGTAGGATTAACTGATGAGGATATGAGTAAACCCCAGATA
GGAATTTCCTCAGTATGGTATGAAGGAAATACATGTAATATGCATTTGTTGAAATTAGCT
GAAGCTGTAAAAGAAGGGGTTCAAGAAGCTAATATGGTTGGGTTTAGGTTTAACACTATT
GGTGTTAGTGATGCTATTAGTATGGGGACACGTGGCATGTGTTTTAGTTTGCAGTCAAGA
GATTTGATTGCTGATAGTATTGAAACTGTTATGTCTGCTCAGTGGTATGATGGGAATATT
GCTATTCCTGGTTGTGACAAAAATATGCCAGGCACAATTATGGCGATGGGAAGACTAAAC
AGGCCAAGTATCATGATATACGGTGGAACCATTAAGCCTGGTCATTTTCAAGGGCACACA
TTCGACATTGTATCCGCTTTCCAGGTGTATGGAGAGTATGTTAGTGGTTCTGTTAGTGAT
GAAGAAAGGATGAATGTAGTTCGTAATTCATGTCCTGGTGCGGGGGCTTGTGGTGGAATG
TATACAGCAAATACCATGGCATCTGCTATTGAGACGTTGGGCATGTCACTGCCTTATAGC
TCTTCCACACCAGCTGAAGACCCACTGAAGTTGGATGAGTGCCGCCTAGCGGGAAAATAT
CTTCTGGAATTGTTGAAGATGGACTTGAAACCTCGAGATATCATCACAAAAAAGTCACTT
CGAAATGCAATGGTGATGGTCATGTCGCTTGGTGGATCAACGAATGCTGTACTGCATTTA
ATTGCTATTGCAAGATCTGTTGGCTTGGAATTAACTCTAGATGACTTCCAGAAGGTTAGC
GATGCGGTTCCTTTCCTTGCTGATCTGAAGCCTAGTGGAAAATATGTTATGGAGGATGTG
CACAAGATTGGAGGTACACCTGCAGTCATTCGCCACCTATTGGAGCTTGGGTATTTGGAC
GGGGACTGTATGACTGTCACGGGAAAGACACTGGCTGAAAACGCAAAGCTATTTCCTTCT
TTAGCTGAAGGTCAGCAAATTATAAGACCATTGTCCAACCCCATCAAAGAAACGGGCCAC
ATTCAGATATTATATGGAAACCTTGCACCAGACGGCAGCGTGGCAAAGATCACTGGGAAA
GAAGGGATGTACTTTTCTGGCCCCGCTTTAGTGTTTGAAGGAGAGGAAGCTATGATTGCA
GCTATCTCAGAAGACCCTTTGAGCTTTAAGGGAAAAGTTGTTGTCATTAGAGGAGAGGGA
CCTAAAGGAGGACCAGGAATGCCCGAAATGTTGACACCGACAAGTGCCATTATGGGTGCA
GGTCTTGGGAAGGATTGTGCATTACTTACTGATGGTAGATTTTCGGGAGGTTCTCATGGA
TATGTTGTTGGACATATATGTCCTGAAGCACAGGAAGGAGGTCCAATCGGTCTTGTTCAA
GATGGAGACATAATTACAATTGACATTCAGAAGAGGAAAATGGACGTTCAGTTATCAGAC
GAGGAGTTTGAGCAGCGTAGAAAGAATTGGACTCCTCCTGCATATAAAGCCGACCGAGGG
GTTCTCTACAAGTATATCAGAAATGTGCAATCTGCTTCCAAGGGATGTGTTACTGATGAA
TAG

Peptide Sequence

PEP ID

XP_016464930.1
PEP Infomation

PREDICTED: dihydroxy-acid dehydratase, chloroplastic-like [Nicotiana tabacum]
Sequence

MQAQLLSPPTYRPTPTTLTTTLFPKCRPHFKKPPTFTIKATTTTSTPPQTTTQKLNKYSS
RITEPKSQGGSQAILYGVGLTDEDMSKPQIGISSVWYEGNTCNMHLLKLAEAVKEGVQEA
NMVGFRFNTIGVSDAISMGTRGMCFSLQSRDLIADSIETVMSAQWYDGNIAIPGCDKNMP
GTIMAMGRLNRPSIMIYGGTIKPGHFQGHTFDIVSAFQVYGEYVSGSVSDEERMNVVRNS
CPGAGACGGMYTANTMASAIETLGMSLPYSSSTPAEDPLKLDECRLAGKYLLELLKMDLK
PRDIITKKSLRNAMVMVMSLGGSTNAVLHLIAIARSVGLELTLDDFQKVSDAVPFLADLK
PSGKYVMEDVHKIGGTPAVIRHLLELGYLDGDCMTVTGKTLAENAKLFPSLAEGQQIIRP
LSNPIKETGHIQILYGNLAPDGSVAKITGKEGMYFSGPALVFEGEEAMIAAISEDPLSFK
GKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKDCALLTDGRFSGGSHGYVVGHICPEA
QEGGPIGLVQDGDIITIDIQKRKMDVQLSDEEFEQRRKNWTPPAYKADRGVLYKYIRNVQ
SASKGCVTDE

Transcript Sequence

Gene sequence data has not been registered.